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Calculating the bulk modulus for a lipid bilayer with nonequilibrium molecular dynamics simulation.

机译:用非平衡分子动力学模拟计算脂质双层的体积模量。

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摘要

Nonequilibrium molecular dynamics (NEMD) computer simulations are used to calculated the bulk modulus for a dimyristoylphosphatidylcholine bilayer. A methodology is developed whereby NEMD can be effectively used to calculate material properties for complex systems that undergo long time-scale conformational changes. It is found that the bulk modulus upon expansion from a zero stress state agrees well with experimental estimates. However, it is also found that the modulus upon contraction from a zero stress state is larger. From a molecular perspective, it is possible to explain this phenomena by examining the molecular origins of the pressure response. The finding that the two moduli are not equal upon compression and expansion is in apparent contradiction to osmotic stress experiments where the area modulus was found to be the same upon expansion and contraction. This issue is addressed.
机译:非平衡分子动力学(NEMD)计算机模拟用于计算二肉豆蔻酰基磷脂酰胆碱双层的体积模量。开发了一种方法,NEMD可以有效地用于计算经历长时间尺度构象变化的复杂系统的材料属性。发现从零应力状态膨胀时的体积模量与实验估计非常吻合。然而,还发现从零应力状态收缩时的模量更大。从分子的角度来看,可以通过检查压力响应的分子起源来解释这种现象。在压缩和膨胀时两个模量不相等的发现与渗透应力实验明显矛盾,在渗透应力实验中,面积模量在膨胀和收缩时是相同的。此问题已解决。

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